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Bristlecone Namespace

The core library of Bristlecone, containing model-fitting functions.

Type/Module Description

-logL

Bristlecone (Module)

Main functionality of Bristlecone, including functions to scaffold `ModelSystem`s and for model-fitting (tests and real fits).

Bristlecone (Module)

Conditioning

Diagnostics

Diagnostic techniques for determining the suitability of
 results obtained with Bristlecone.

EstimationEngine

The estimation engine represents the method used to calculate equations and optimise a likelihood function. The whole estimation engine is tensor-based internally, but may take float-based equations as a legacy option.

iteration

Language

An F# Domain Specific Language (DSL) for scripting with Bristlecone.

List

Map

ModelSelection

Contains tools for conducting Model Selection across
 individual subjects and hypotheses.

ModelSystem

Represents an ordinary differential equation model system and its likelihood as an objective function that may be optimised.

Objective

Configures a single function that represents a model and its likelihood when fit to time-series data.

optim-space

optim-space-transformed

Parameter

parameter

PositiveInt

Result

Seq

ShortCode

Solver

Helper functions for the creation of `Solver` functions, which apply time-series models to time-series data (when using Bristlecone time-series types).

Tensors

More shape-aware intermediary layer for translating between DiffSharp tensors and Bristlecone functions.

Test

Time

Writer

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