ModelSystem Module
Represents an ordinary differential equation model system and its likelihood as an objective function that may be optimised.
Types
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An estimated model fit for a time-series model. |
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An equation that may require fixed or free parameters, the current time t, the current response value, and / or external environmental time series. |
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Computes the hidden state’s initial value at t0 from fitted parameters and baseline known values. |
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The negative log likelihood given the predicted and observed per-variable time-series and a function to retrieve parameters required by the likelihood function. |
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A function that computes a measured system property given a current (time t) and previous (time t-1) system state. |
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The model system may make use of either stepped or integrated-time equations. Each are both require the same inputs, but differ in whether a solver is applied or not. Here, the DU's purpose is for additional type safety. TODO Allow state to differ between equations. |
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A function that returns a parameter's current value by its name. |
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Predicted time-series for a single variable. 'u is the state unit of measure. |
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A single variable’s observed vs expected values after model-fitting. |
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bristlecone