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Model Module

Terms for scaffolding a model system for use with Bristlecone.

Functions and values

Function or value Description

addEquation name eq builder

Full Usage: addEquation name eq builder

Parameters:
Returns: ModelBuilder
name : string
eq : ModelExpression
builder : ModelBuilder
Returns: ModelBuilder

compile

Full Usage: compile

Returns: ModelBuilder -> ModelSystem
Returns: ModelBuilder -> ModelSystem

empty

Full Usage: empty

Returns: ModelBuilder
Returns: ModelBuilder

estimateParameter name constraintMode lower upper builder

Full Usage: estimateParameter name constraintMode lower upper builder

Parameters:
Returns: ModelBuilder
name : string
constraintMode : Constraint
lower : float
upper : float
builder : ModelBuilder
Returns: ModelBuilder

includeMeasure name measure builder

Full Usage: includeMeasure name measure builder

Parameters:
Returns: ModelBuilder
name : string
measure : MeasureEquation
builder : ModelBuilder
Returns: ModelBuilder

useLikelihoodFunction likelihoodFn builder

Full Usage: useLikelihoodFunction likelihoodFn builder

Parameters:
Returns: ModelBuilder
likelihoodFn : LikelihoodFn
builder : ModelBuilder
Returns: ModelBuilder

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